Deforestation through land-use conversion, illegal logging, and timber trafficking is believed to cause ~10% of the annual human carbon dioxide emissions at the global level. Given the large contribution, local and national policies have been set in place in the effort to reduce deforestation and support reforestation. However, accurate assessment of forest carbon stock is expensive and challenging in remote areas and on large geographical scales. To improve carbon stock monitoring and evaluation of fine-scale forest loss, we developed a rapid, automatic, scalable, and cost-efficient generalized deep learning framework that uses diverse remote sensing data and satellite imagery to derive aboveground carbon density from accurate estimates of tree canopy heights at fine-grained resolution (30x30 meters) in remote tropical rainforests. The remote sensing data is composed of Landsat-8, Sentinel-1, land cover, digital elevation model, and NASA CMS airborne LiDAR, as well as vegetation indices, texture metrics, and climatic data. Data sources were compiled into a data pipeline which produced >300 features and 2 million observations over forests in Indonesian Borneo. Using LiDAR swath data on canopy forest high for ~100,000 hectares in Indonesian Borneo to create a training and validation datasets, our neural network model produced aboveground carbon density estimates with R2 of 0.82, which is a significant improvement from comparable works by using Random Forest (R2 of 0.3-0.5). This deep learning framework can be used to facilitate further carbon stock modeling in other forest regions (e.g., Brazil) as well as for the general purpose of climate change mitigation.

Schistosomiasis is a debilitating parasitic disease of poverty that affects more than 200 million people worldwide, mostly in sub-Saharan Africa, and is clearly associated with the construction of dams and water resource management infrastructure in tropical and subtropical areas. Changes to hydrology and salinity linked to water infrastructure development may create conditions favorable to the aquatic vegetation that is suitable habitat for the intermediate snail hosts of schistosome parasites. With thousands of small and large water reservoirs, irrigation canals, and dams developed or under construction in Africa, it is crucial to accurately assess the spatial distribution of high-risk environments that are habitat for freshwater snail intermediate hosts of schistosomiasis in rapidly changing ecosystems. Yet, standard techniques for monitoring snails are labor-intensive, time-consuming, and provide information limited to the small areas that can be manually sampled. Consequently, in low-income countries where schistosomiasis control is most needed, there are formidable challenges to identify potential transmission hotspots for targeted medical and environmental interventions. In this study, we developed a new framework to map the spatial distribution of suitable snail habitat across large spatial scales in the Senegal River Basin by integrating satellite data, high-definition, low-cost drone imagery, and an artificial intelligence (AI)-powered computer vision technique called semantic segmentation. A deep learning model (U-Net) was built to automatically analyze high-resolution satellite imagery to produce segmentation maps of aquatic vegetation, with a fast and robust generalized prediction that proved more accurate than a more commonly used random forest approach. Accurate and up-to-date knowledge of areas at highest risk for disease transmission can increase the effectiveness of control interventions by targeting habitat of disease-carrying snails. With the deployment of this new framework, local governments or health actors might better target environmental interventions to where and when they are most needed in an integrated effort to reach the goal of schistosomiasis elimination.